شناسایی مناطق ژنومی مرتبط با تعداد نتاج متولدشده در بزهای نژاد مورسیانو-گرانادینا بر پایه روش نشانه‌های انتخاب

Bertolini, F., Servin, B., Servin, B., Talenti, A., Rochat, E., & Kim E.S. (2018). Signatures of selection and environmental adaptation across the goat genome post-domestication. Genetic Selection Evolution, 50, 1-24. https://doi:10.1186/s12711-018-0421-y. 

Bonhomme, M., Chevalet, C., Servin, B., Boitard, S., Abdallah, J., Blott, S., & SanCristobal, M. (2010). Detecting selection in population trees: the Lewontin and Krakauer test extended. Genetics, 186(1), 241-262. https://doi:10.1534/genetics.104.117275

Chen, Q., Wang, Z., Sun, J., Huang, Y., Hanif, Q., Liao, Y., & Lei, C. (2020). Identification of genomic characteristics and selective signals in a Du'an Goat flock. Animals (Basel), 10(6), 994. https://doi:10.3390/ani10060994

Fang, X., Gu, B., Chen, M., Sun, R., Zhang, J., Zhao, L., & Zhao, Y. (2023). Genome-wide association study of the reproductive traits of the Dazu black goat (Capra hircus) using whole-genome resequencing. Genes, 14, 1960. https://doi:10.3390/genes14101960

Fariello, M.I., Boitard, S., Naya, H., SanCristobal, M., & Servin, B. (2013). Detecting signatures of selection through haplotype differentiation among hierarchically structured populations. Genetics, 193(3), 929-941. https://doi:10.1534/genetics.112.147231

Gebreselase, H.B., Nigussie, H., Wang, C., & Luo, C. (2024). Genetic diversity, population structure and selection signature in Begait goats revealed by whole-genome sequencing. Animals, 14, 307. https://doi:10.3390/ani14020307

Heuser, M., Yap, D.B., Leung, M., De Algara, T.R., Tafech, A., & Mckinney, S. (2009). Loss of MLL5 results in pleiotropic hematopoietic defects, reduced neutrophil immune function, and extreme sensitivity to DNA demethylation. Blood, 113, 1432-1443. https://doi:10.1182/blood-2008-06-162263

Huang, C., Zhao, Q., Chen, Q., Su, Y., Ma, Y., Ye, S., & Zhao, Q. (2024). Runs of homozygosity detection and selection signature analysis for local goat breeds in Yunnan, China. Genes, 15, 313. https://doi:10.3390/genes15030313

Hu, M., Jiang, H., Lai, W., Shi, L., Yi, W., Sun, H., Chen, C., Yuan, B., Yan, S., & Zhang, J. (2023). Assessing genomic diversity and signatures of selection in Chinese Red Steppe Cattle using high-density SNP array. Animals, 13, 1717. https://doi:10.3390/ani13101717

Hui, Y., Zhang, Y., Wang, K., Pan, C., Chen, H., Qu, L., Song, X., & Lan, X. (2020). Goat DNMT3B: An indel mutation detection, association analysis with litter size and mRNA expression in gonads. Theriogenology, 147, 108-115. https://doi: 10.1016/j.theriogenology.2020.02.025

Lyu, Z., Qin, N., Tyasi, T.L., Zhu, H., Liu, D., Yuan, S., & Xu, R. (2016). The Hippo/MST pathway member SAV1 plays a suppressive role in development of the prehierarchical follicles in hen ovary. PLoS ONE, 11(8), e0160896. https://doi:10.1371/journal.pone.0160896

Podzus, J., Kowalczyk-Quintas, C., Schuepbach-Mallepell, S., Willen, L., Staehlin, G., Vigolo, M., Tardivel, A., Headon, D., Kirby, N., Mikkola, M.L., Schneider, H., & Schneider, P. (2017). Ectodysplasin A in biological fluids and diagnosis of ectodermal dysplasia. Journal of Dental Research, 96(2), 217-224. https://doi:10.1177/0022034516673562

Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M.A., Bender, D., Maller, J., Sklar, P., de Bakker, P.I., Daly, M.J., & Sham, P.C. (2007). PLINK: a tool set for whole-genome association and population-based linkage analyses. The American Journal of Human Genetics, 81(3), 559-575. https://doi:10.1086/519795

Sallam, A.M., Reyer, H., & Wimmers, K. (2023). Genome-wide landscape of runs of homozygosity and differentiation across Egyptian goat breeds. BMC Genomics, 24, 573. https://doi: 10.1186/s12864-023-09679-6

Salilew-Wondim, D., Holker, M., Rings, F., Ulas-Cinar, M., Peippo, J., Tholen, E., Looft, C., Schellander, K., & Tesfaye, D. (2010). Bovine pretransfer endometrium and embryo transcriptome fingerprints as 2 predictors of pregnancy success after embryo transfer. Physiol Genomics, 11, 137-145. https://doi:10.1152/physiolgenomics.00047.2010

Sánchez-Ramos, R., Trujano-Chavez, M.Z., Gallegos-Sánchez, J., Becerril-Pérez, C.M., Cadena-Villegas, S., & Cortez-Romero, C. (2023). Detection of candidate genes associated with fecundity through genome-wide selection signatures of Katahdin ewes. Animals, 13, 272. https://doi:10.3390/ani13020272

Sun, X., Guo, J., Li, L., Zhong, T., Wang, L., Zhan, S., Lu, J., Wang, D., Dai, D., & Liu, G.E. (2022). Genetic diversity and selection signatures in Jianchang Black Goats revealed by whole-genome sequencing data. Animals, 12, 2365. https://doi:10.3390/ani12182365

Sun, X., Niu, Q., Jiang, J., Wang, G., Zhou, P., Li, J., Chen, C., Liu, L., Xu, L., & Ren, H. (2023). Identifying candidate genes for litter size and three morphological traits in Youzhou Dark Goats based on genome-wide SNP markers. Genes, 14, 1183. https://doi:10.3390/genes14061183

Sozoniuk, M., Jamio, M., Kankofer, M., & Kowalczyk, K. (2022). Reference gene selection in bovine caruncular epithelial cells under pregnancy-associated hormones exposure. Research Square, 12, 12742. https://doi:10.1038/s41598-022-17069-3

Tao, L., He, X., Jiang, Y., Liu, Y., Ouyang, Y., Shen, Y., Hong, Q., & Chu, M. (2021). Genome-wide analyses reveal genetic convergence of prolificacy between Goats and Sheep. Genes, 12, 480. https://doi:10.3390/genes12040480

Tao, H., Mei, S., Sun, X., Peng, X., Zhang, X., Ma, C., Wang, L., Hua, L., & Li, F. (2013). Associations of TCF12, CTNNAL1 and WNT10B gene polymorphisms with litter size in pigs. Animal Reproduction Science, 140(3-4), 189-194. https://doi:10.1016/j.anireprosci.2013.05.013

Waineina, R.W., Okeno, T.O., Ilatsia, E.D., & Ngeno, K. (2022). Selection signature analyses revealed genes associated with adaptation, production, and reproduction in selected goat breeds in Kenya. Frontiers in Genetics, 13, 858923. https://doi:10.3389/fgene.2022.858923

Wang, J.J., Zhang, T., Chen, Q.M., Zhang, R.Q., Li, L., Cheng, S.F., Shen, W., & Lei, C.Z. (2020). Genomic signatures of selection associated with litter size trait in Jining Gray Goat. Frontiers in Genetics, 11, 286. https://doi:10.3389/fgene.2020.00286

Yap, D.B., Walker, D.C., Prentice, L.M., Mckinney, S., Turashvili, G., & MooslehnerAllen, K. (2011). Mll5 is required for normal spermatogenesis. PLoS ONE, 6, e27127. https://doi:10.1371/journal.pone.0027127

Zhao, F., Deng, T., Shi, L., Wang, W., Zhang, Q., Du, L., & Wang, L. (2020). Genomic scan for selection signature reveals fat deposition in Chinese indigenous sheep with extreme tail types. Animals (Basel), 10(5), 773. https://doi:10.3390/ani10050773