- Ataee, R., Mohammadi, V. A., Taleii, A. & Naghavi, M. R. (2013). Association mapping in barley roots. Iranian Journal of Field Crop, 44(2), 347-357. (In Farsi)
- Bassam, B. J., Caetano-Anolles, G. & Gresshoff, P. M. (1991). Fast and sensitive silver staining of DNA in polyacrylamide gels. Analytical Biochemistry, 196: 80-83.
- Courtois, B., Shen, L., Petalcorin, W., Carandang, S., Mauleon, R. & Li1, Z. (2003). Locating QTLs controlling constitutive root traits in the rice population IAC 165 × Co39. Euphytica, 134: 335–345.
- Dadras, A. R., Sabouri, H., Mohammadinejad, Gh., Sabouri A. & Shoai-Deylami, M. (2014). Association analysis, genetic diversity and structure analysis of tobacco based on AFLP markers. Molecular Biology Reports, 41(5), 3317-3329.
- Donnelly, P. (2008). Progress and challenges in genome-wide association studies in humans. Nature, 456, 728-731.
- Evanno, G., Reganut, E. & Goudet, J. (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14, 2611-2620.
- Gowda, V. R. P., Henry, A., Yamauchi, A., Shashidhar, H. E. & Serraj, R. (2011). Root biology and genetic improvement for drought avoidance in rice. Field Crops Researche, 122(1), 1-13
- Hardy, O. J., & Vekemans, X. (2002). SPAGeDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Resources, 2(4), 618-620.
- Hwang, E. Y. (2008). Association analysis in soybean. Ph.D. Thesis. University of Maryland, College Park.
- Jun, T. H., Van, K., Kim, M. Y., Lee, S. H. & Walker, D. R. (2008). Association analysis using SSR markers to find QTL for seed protein content in soybean. Euphytica, 62, 179-191.
- Kafi, M., Borzuee, A., Salehi, M., Kamandi, A., Masumi, A. & Nabati, J. (2009). Physiology and environmental stress in plants. (Pp 500). Jihad-e-Daneshgahi Mashhad Publications, Mashhad, Iran.
- Kang, S. Y., Lee, K. J., Lee, G. J., Kim, J. B., Chung, S. J., Song, J. Y., ... & Kim, D. S. (2010). Development of AFLP and STS markers linked to a waterlogging tolerance in Korean soybean landraces. Biologia Plantarum, 54(1), 61-68.
- Lafitte, H. R., Yongsheng, G., Yan, S. & Li, Z. K. (2007). Whole plant responses, key processes, and adaptation to drought stress: the case of rice. Journal of ExperimentalBotany, 58, 169-175.
- Álvarez, M. F., Mosquera, T. & Blair, M. W. (2014). The use of association genetics approaches in plant breeding. Plant Breeding Reviews, 38, 17-68.
- Ndjiondjop, M. N., Cisse, F., Futakuchi, K., Lorieux, M., Manneh, B., Bocco, R. & Fatondji, B. (2010). Effect of drought on rice (Oryza spp.) genotypes according to their drought tolerance level. Innovation andPartnerships to RealizeAfrica’s Rice Potential, SecondAfrica Rice Congress, Bamako, Mali, 22-26.
- Nordborg, M. & Weigel, D. (2008). Next-generation genetics in plants. Nature, 456, 720-723.
- Pocovi, M. I. & Mariotti, J. A. (2015). A bayesian approach to inferring the genetic population structure of sugarcane accessions from INTA (Argentina). Chilean Journal of Agricultural Research, 75(2), 152-159.
- Pritchard, J. K., Stephens, M. & Donnelly, P. (2000). Inference of population structure using multilocus genotype data. Genetics, 155, 945-959.
- Rohlf, F. (2000). NTSYS-PC, Numerical Taxonomy System for the PC ExeterSoftware, Version 2.1. Applied Biostatistics Inc Setauket, USA.
- Roy, J.K., Bandopadhyay, R., Rustgi, S., Balyan, H.S. & Gupta, P.K. (2006). Association analysis of agronomically important traits using SSR, SAMPL and AFLP markers in bread wheat. Current Science, 5, 683-689.
- Saghai-Maroof, M. A., Soliman, K. M., Jorgensen, R. A. & Allard, R. W. (1984). Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. In: Proceedings of the National Academy of Sciences , United States of America 81: 8014-8018
- Shaaf, S., Bihamta, M., Talee, A. & Naghavi, M. R. (2012). Association analysis of single nucleotide variation inflowering time genes Ppd-H1, HvCO1 and HvG1 in the atmosphere (H.Vulgare). Journal of Modern Genetics, 7(2), 179-191.
- Spataro, G., Tiranti, B., Arcaleni, P., Bellucci, E., Attene, G., Papa, R., Spagnoletti Zeuli, P. & Negri, V. (2011). Genetic diversity and structure of a worldwide collection of Phaseolus coccineus L. Theoretical Applied Genetics, 122, 1281-1291.
- Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods. Molecular Evolutionary Genetics Analysis, 28(10), 2731-2739.
- Todaka, D., Nakashima, K., Shinozaki, K. & Yamaguchi-Shinozaki, K. (2012). Toward understanding transcriptional regulatory networks in abiotic stress responses and tolerance in rice. Rice, 5(1), 6.
- Uga, Y., Okuno, K. & Yano, M. (2011). Dro1, a major QTL involved in deep rooting of rice under upland field conditions. Journal of Experimental Botany, 62(8), 2485-2494.
- Van Berloo, R. (1999). GGT: Software for the display of graphical genotypes. Journal of Heredity, 90, 328-329.
- Vos, P., Hogers, R., Bleeker, M., Reijans, M., Lee, T. V. D., Hornes, M., Frijters, A., Pot, J., Peleman, J., Kuiper, M. & Zabeau, M. (1995). AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research, 23, 4407-4414.
- Wang, H., Xu, X., Zhan, X., Zhai, R., Wu, W., Shen, X., Dai, G., Cao, L. & Cheng, S. (2013). Identification of qRL7, a major quantitative trait locus associated with rice root length in hydroponic conditions. Journal of Breeding Science, 63, 267-274.
- Wen, W., Mei, H., Feng, F., Yu, S., Huang, Z., Wu, J., Chen, L., Xu, X. & Luo, L. (2009). Population structure and association mapping on chromosome 7 using a diverse panel of Chinese germplasm of rice (Oryza sativa L.). Theoretical Applied Genetics, 119, 459-470.
- Yoshida, S. & Hasegawa, S. (1982). The rice root system: its development and function. In: Proceedings of Drought resistance in crops withemphasis on rice. Los Banos, Philippines: International Rice Research Institute, 97-114.
- Yoshida, S., Forno, D. A., Cock, J. H. & Gomez, K. A. (1976). Laboratory manual for physiological studies of rice. IRRI, Los Banos, Philipines.
- Yu, J., Pressoir, G., Briggs, W. H., Vroh Bi, I., Yamasaki, M., Doebley, J. F., McMullen, M. D., Gaut, B. S., Nielsen, D. M., Holland, J. B., Kresovich, S. & Buckler, E. S. (2006). A unified mixed-model method for association mapping that accounts for multiple levels of relatedness. Nature Genetics, 38, 203-208.
- Zhou, J., You, A., Ma, Z., Zhu, L. & He, G. (2012). Association analysis of important agronomic traits in japonica rice germplasm. Journal of Biotechnology, 11(12), 2957-2970.
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