مطالعه پویش کل ژنوم جهت شناسایی جایگاه‌های ژنتیکی مرتبط با بیماری لکوز در گاوهای هلشتاین ایران

Reference

Abdalla, E. A., Peñagaricano, F., Byrem, T. M., Weigel, K. A., & Rosa, G. J. M. (2016). Genome‐wide association mapping and pathway analysis of leukosis incidence in a US Holstein cattle population. Animal genetics, 47(4), 395-407.‏

Abdullahi Arpanahi, R., Pakdel, A., & Zandi Bagche Mariam, M. B. (2013). From the infinitesimal inheritance model with partial effects (modelInfinitesimal) to genomic selection. New genetics, 7(29-2). (in Perian).

Badour, K., Zhang, J., Shi, F., McGavin, M. K., Rampersad, V., Hardy, L. A., Field, D., & Siminovitch, K. A. (2003). The Wiskott-Aldrich syndrome protein acts downstream of CD2 and the CD2AP and PSTPIP1 adaptors to promote formation of the immunological synapse. Immunity, 18(1), 141-154.‏

Blasiak, J., Szczepańska, J., Sobczuk, A., Fila, M., & Pawlowska, E. (2021). RIF1 Links Replication Timing with Fork Reactivation and DNA Double-Strand Break Repair. International Journal of Molecular Sciences, 22(21), 11440.‏

Brym, P., Bojarojć-Nosowicz, B., Oleński, K., Hering, D. M., Ruść, A., Kaczmarczyk, E., & Kamiński, S. (2016). Genome-wide association study for host response to bovine leukemia virus in Holstein cows. Veterinary Immunology and Immunopathology, 175, 24-35.‏

Carignano, H. A., Roldan, D. L., Beribe, M. J., Raschia, M. A., Amadio, A., Nani, J. P., & Miretti, M. M. (2018). Genome-wide scan for commons SNPs affecting bovine leukemia virus infection level in dairy cattle. BMC genomics, 19(1), 1-15.‏

Carlson, G. (2002). Diseases of the hematopoietic and hemolymphatic systems. Large Animal Internal Medicine, ed, 3, 1042-1043.

Chen, Q. Z., Yang, M. Y., Liu, X. Q., Zhang, J. N., Mi, S. Y., Wang, Y. J., & Yu, Y. (2022). Blood transcriptome analysis and identification of genes associated with supernumerary teats in Chinese Holstein cows. Journal of Dairy Science, 105(12), 9837-9852.‏

Falini, B., Martino, G., & Lazzi, S. (2022). A comparison of the International Consensus and 5th World Health Organization classifications of mature B-cell lymphomas. Leukemia, 1-17.‏

Gao, Y., Jiang, J., Yang, S., Cao, J., Han, B., Wang, Y., & Sun, D. (2018). Genome-wide association study of Mycobacterium avium subspecies paratuberculosis infection in Chinese Holstein. BMC genomics, 19(1), 1-10.

Girirajan, S., Hauck, P. M., Williams, S., Vlangos, C. N., Szomju, B. B., Solaymani-Kohal, S., & Elsea, S. H. (2008). Tom1l2 hypomorphic mice exhibit increased incidence of infections and tumors and abnormal immunologic response. Mammalian Genome, 19(4), 246-262.‏

Goddard, M. E., & Hayes, B. J. (2009). Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nature Reviews Genetics, 10(6), 381-391.

Goldfinch, N. G. (2010). Characterisation of mucosal associated invariant T-cells and MR1 in ruminants.‏

González-Rodríguez, A., Munilla, S., Mouresan, E. F., Cañas-Álvarez, J. J., Díaz, C., Piedrafita, J., & Varona, L. (2016). On the performance of tests for the detection of signatures of selection: a case study with the Spanish autochthonous beef cattle populations. Genetics Selection Evolution, 48(1), 1-12.‏

Hemmatzadeh, F., & Momtaz, H. (2007). Detection of bovine Leukemia virus antigens expressed in lymph node tumors that induce humoral immunity in cow. Journal of Veterinary Research, 62(3), 281-284.

Kim, E. S., Sonstegard, T. S., & Rothschild, M. F. (2015). Recent artificial selection in US Jersey cattle impacts autozygosity levels of specific genomic regions. BMC genomics, 16(1), 1-10.‏

Kościuczuk, E. M., Lisowski, P., Jarczak, J., Krzyżewski, J., Zwierzchowski, L., & Bagnicka, E. (2014). Expression patterns of β-defensin and cathelicidin genes in parenchyma of bovine mammary gland infected with coagulase-positive or coagulase-negative Staphylococci. BMC Veterinary Research, 10(1), 1-14.‏

Liu, D., Chen, Z., Zhao, W., Guo, L., Sun, H., Zhu, K., & Pan, Y. (2021). Genome-wide selection signatures detection in Shanghai Holstein cattle population identified genes related to adaption, health and reproduction traits. BMC genomics, 22(1), 1-19.‏

Lou, Y., & Huang, Z. (2020). microRNA‑15a‑5p participates in sepsis by regulating the inflammatory response of macrophages and targeting TNIP2. Experimental and therapeutic medicine, 19(4), 3060-3068.‏

Malchiodi, F., Brito, L. F., Schenkel, F. S., Christen, A. M., Kelton, D. F., & Miglior, F. (2018). Genome-wide association study and functional analysis of infectious and horn type hoof lesions in Canadian Holstein cattle. In Proceedings of the World Congress on Genetics Applied to Livestock Production.‏

Mekata, H., & Yamamoto, M. (2022). Single-Nucleotide Polymorphism on Spermatogenesis Associated 16 Gene-Coding Region Affecting Bovine Leukemia Virus Proviral Load. Veterinary Sciences, 9(6), 275.‏

Meuwissen, T. H., Hayes, B. J., & Goddard, M. (2001). Prediction of total genetic value using genome-wide dense marker maps. genetics, 157(4), 1819-1829.‏

Mohammadi, V., Atyabi, N., & Nikbakht, B. G. (2011). Seroprevalence of bovine leukemia virus in some dairy farms in Iran. Global Veterinaria, 7(3), 305-309.

Nafikov, R. A., Schoonmaker, J. P., Korn, K. T., Noack, K., Garrick, D. J., Koehler, K. J., & Beitz, D. C. (2013). Sterol regulatory element binding transcription factor 1 (SREBF1) polymorphism and milk fatty acid composition. Journal of dairy science, 96(4), 2605-2616.‏

Pierce, K. D., Handford, C. A., Morris, R., Vafa, B., Dennis, J. A., Healy, P. J., & Schofield, P. R. (2001). A nonsense mutation in the α1 subunit of the inhibitory glycine receptor associated with bovine myoclonus. Molecular and Cellular Neuroscience, 17(2), 354-363.‏

Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A., Bender, D., & Sham, P. C. (2007). PLINK: a tool set for whole-genome association and population-based linkage analyses. The American journal of human genetics, 81(3), 559-575.‏

Radostits, O. M., Gay, C. C., Blood, D. C., & Hinchcliff, K. W. (2000). Mastitis In: Veterinary Medicine, A Textbook of the Diseases of Cattle, Sheep, Pigs, Goats and Horses. Edn. 9th publ. Book power with Saunders, London, 611-613.‏

Radostits, O. M., Gay, C. C., Hinchcliff, K. W., & Constable, P. D. (2007). A textbook of the diseases of cattle, horses, sheep, pigs and goats. Veterinary medicine, 10, 2045-2050.

Reginald, J. (1999). Bovine Leukemia Virus. Current Veterinary therapy (Food Animal Practice). 4th ed. Sounders Company, pp: 296-299.

Reigstad, L. J., Varhaug, J. E., & Lillehaug, J. R. (2005). Structural and functional specificities of PDGF‐C and PDGF‐D, the novel members of the platelet‐derived growth factors family. The FEBS journal, 272(22), 5723-5741.‏

Sahana, G., Guldbrandtsen, B., Thomsen, B., Holm, L. E., Panitz, F., Brøndum, R. F., & Lund, M. S. (2014). Genome-wide association study using high-density single nucleotide polymorphism arrays and whole-genome sequences for clinical mastitis traits in dairy cattle. Journal of dairy science, 97(11), 7258-7275.‏

Saifi Abad Shapouri, M. (2005). Viral diseases of cattle. Author: Robert Karz, first edition, Shahid Chamran University of Ahvaz Printing and Publishing Department, 157-171.(in Persian)

Salzer, U., Bacchelli, C., Buckridge, S., Pan-Hammarström, Q., Jennings, S., Lougaris, V., & Grimbacher, B. (2009). Relevance of biallelic versus monoallelic TNFRSF13B mutations in distinguishing disease-causing from risk-increasing TNFRSF13B variants in antibody deficiency syndromes. Blood, The Journal of the American Society of Hematology, 113(9), 1967-1976.‏

Sender, G., Korwin-Kossakowska, A., Pawlik, A., Hameed, K. G. A., & Oprzadek, J. (2013). Genetic Basis of Mastitis Resistance in Dairy Cattle-A Review/Podstawy Genetyczne Odpornosci Krow Mlecznych Na Zapalenie Wymienia-Artykul Przegladowy. Annals of Animal Science, 13(4), 663.‏

Soares, R. A. N., Vargas, G., Duffield, T., Schenkel, F., & Squires, E. J. (2021). Genome-wide association study and functional analyses for clinical and subclinical ketosis in Holstein cattle. Journal of Dairy Science, 104(9), 10076-10089.‏

Soupene, E., & Kuypers, F. A. (2019). ACBD6 protein controls acyl chain availability and specificity of the N-myristoylation modification of proteins [S]. Journal of lipid research, 60(3), 624-635.

Taghizadeh, S., Gholizadeh, M., Moradi, M. H., Costilla, R., Moore, S., & Di Gerlando, R. (2022). Genome-wide identification of copy number variation and association with fat deposition in thin and fat-tailed sheep breeds. Scientific Reports, 12(1), 1-12.‏

Takeshima, S. N., Sasaki, S., Meripet, P., Sugimoto, Y., & Aida, Y. (2017). Single nucleotide polymorphisms in the bovine MHC region of Japanese Black cattle are associated with bovine leukemia virus proviral load. Retrovirology, 14(1), 1-7.‏

Taye, M., Kim, J., Yoon, S. H., Lee, W., Hanotte, O., Dessie, T., & Kim, H. (2017). Whole genome scan reveals the genetic signature of African Ankole cattle breed and potential for higher quality beef. BMC genetics, 18(1), 1-14.‏

Teo, Y. Y., Fry, A. E., Clark, T. G., Tai, E. S., & Seielstad, M. (2007). On the usage of HWE for identifying genotyping errors. Annals of Human genetics, 71(5), 701-703.‏

Zhao, J., Liu, Z., Liu, T., Nilsson, S., & Nistér, M. (2008). Identification and expression analysis of an N-terminally truncated isoform of human PDGF-C. Experimental cell research, 314(14), 2529-2543.