شناسایی رشته‌های هموزیگوت ژنومی و بررسی ژن‌های مرتبط در شترهای تک‌کوهانه با استفاده از داده‌های توالی‌یابی کل ژنوم

Al-Hamedawi, T., AL-Mutar, H. A. K. & Al-Yasiri, E. (2017). Investigation of the polymorphism in FSHR gene associated with fertility in pregnant and non-pregnant Iraq buffaloes. Current Research in Microbiology and Biotechnology, 5(6), 1323-1327.

Bertevello, P. S., Teixeira-Gomes, A. P., Seyer, A., Vitorino Carvalho, A., Labas, V., Blache, M. C., Banliat, C., Cordeiro, L. A. V., Duranthon, V., Papillier, P. & Maillard, V. (2018). Lipid identification and transcriptional analysis of controlling enzymes in bovine ovarian follicle. International Journal of Molecular Sciences, 19(10), 3261.

Bolger, A. M., Lohse, M. & Usadel, B. (2014). Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics, 30(15), 2114-2120.

Ceballos, F. C., Joshi, P. K., Clark, D. W., Ramsay, M. & Wilson, J. F. (2018). Runs of homozygosity: windows into population history and trait architecture. Nature Reviews Genetics, 19(4), 220-234.

Chu, M. X., Guo, X. H., Feng, C. J., Li, Y., Huang, D. W., Feng, T., Cao, G. L., Fang, L., Di, R., Tang, Q. Q. & Ma, Y. H. (2012). Polymorphism of 5′ regulatory region of ovine FSHR gene and its association with litter size in Small Tail Han sheep. Molecular Biology Reports, 39(4), 3721-3725.

Chung, P. Y. J., Beyens, G., Riches, P. L., Van Wesenbeeck, L., De Freitas, F., Jennes, K., Daroszewska, A., Fransen, E., Boonen, S., Geusens, P. & Vanhoenacker, F. (2010). Genetic variation in the TNFRSF11A gene encoding RANK is associated with susceptibility to Paget's disease of bone. Journal of Bone and Mineral Research, 25(12), 2592-2605.

Colvin, R. A., Campanella, G. S., Sun, J. & Luster, A. D. (2004). Intracellular domains of CXCR3 that mediate CXCL9, CXCL10, and CXCL11 function. Journal of Biological Chemistry, 279(29), 30219-30227.

Cory, A. T., Price, C. A., Lefebvre, R. & Palin, M. F. (2013). Identification of single nucleotide polymorphisms in the bovine follicle‐stimulating hormone receptor and effects of genotypes on superovulatory response traits. Animal Genetics, 44(2), 197-201.

Danecek, P., Auton, A., Abecasis, G., Albers, C.A., Banks, E., DePristo, M. A., Handsaker, R. E., Lunter, G., Marth, G. T., Sherry, S. T. & McVean, G. (2011). The variant call format and VCFtools. Bioinformatics, 27(15), 2156-2158.

Fitak, R.R., Mohandesan, E., Corander, J., Yadamsuren, A., Chuluunbat, B., Abdelhadi, O., Raziq, A., Nagy, P., Walzer, C., Faye, B. & Burger, P.A. (2020). Genomic signatures of domestication in Old World camels. Communications Biology, 3(1), 1-10.

Gorssen, W., Meyermans, R., Janssens, S. & Buys, N. (2021). A publicly available repository of ROH islands reveals signatures of selection in different livestock and pet species. Genetics Selection Evolution, 53(1), 1-10.

Guo, X., Li, Y., Chu, M., Feng, C., Di, R., Liu, Q., Feng, T., Cao, G., Huang, D., Fang, L. & Tang, Q. (2013). Polymorphism of 5’regulatory region of caprine FSHR gene and its association with litter size in Jining Grey goat. Turkish Journal of Veterinary and Animal Sciences, 37(5), 497-503.

Holl, H., Isaza, R., Mohamoud, Y., Ahmed, A., Almathen, F., Youcef, C., Gaouar, S., Antczak, D.F. & Brooks, S. (2017). A frameshift mutation in KIT is associated with white spotting in the Arabian camel. Genes, 8(3), 102.

Kirin, M., McQuillan, R., Franklin, C. S., Campbell, H., McKeigue, P. M. & Wilson, J. F. (2010). Genomic runs of homozygosity record population history and consanguinity. PloS one, 5(11), p.e13996.

Kjærner-Semb, E., Ayllon, F., Furmanek, T., Wennevik, V., Dahle, G., Niemelä, E., Ozerov, M., Vähä, J. P., Glover, K. A., Rubin, C. J. & Wargelius, A. (2016). Atlantic salmon populations reveal adaptive divergence of immune related genes-a duplicated genome under selection. BMC Genomics, 17(1), 1-12.

Khalkhali-Evrigh, R., Hafezian, S. H., Hedayat-Evrigh, N., Farhadi, A. & Bakhtiarizadeh, M. R. (2018). Genetic variants analysis of three dromedary camels using whole genome sequencing data. PloS one, 13(9), p.e0204028.

Khalkhali-Evrigh, R., Hedayat-Evrigh, N., Hafezian, S. H., Farhadi, A. & Bakhtiarizadeh, M. R., (2019). Genome-wide identification of microsatellites and transposable elements in the dromedary camel genome using Whole-Genome sequencing data. Frontiers in Genetics, p.692.

Khalkhali-Evrigh, R., Hedayat, N., Ming, L., & Jirimutu. (2022). Identification of selection signatures in Iranian dromedary and Bactrian camels using whole genome sequencing data. Scientific Reports, 12(1), 1-10.

Li, H. & Durbin, R. (2009). Fast and accurate short read alignment with Burrows–Wheeler transform. Bioinformatics, 25(14), 1754-1760.

Matsuura, R., Hiraishi, A., Holzman, L. B., Hanayama, H., Harano, K., Nakamura, E., Hamasaki, Y., Nangaku, M. & Noiri, E., (2020). SHROOM3, the gene associated with chronic kidney disease, affects the podocyte structure. Scientific Reports, 10(1), 1-11.

McKenna, A., Hanna, M., Banks, E., Sivachenko, A., Cibulskis, K., Kernytsky, A., Garimella, K., Altshuler, D., Gabriel, S., Daly, M. & DePristo, M. A. (2010). The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Research, 20(9), 1297-1303.

McQuillan, R., Leutenegger, A.L., Abdel-Rahman, R., Franklin, C.S., Pericic, M., Barac-Lauc, L., Smolej-Narancic, N., Janicijevic, B., Polasek, O., Tenesa, A. & MacLeod, A. K. (2008). Runs of homozygosity in European populations. The American Journal of Human Genetics, 83(3), 359-372.

Minegishi, T., Nakamura, K., Yamashita, S., Ikeda, S. & Kogure, K. (2008). Regulation of human luteinizing hormone receptor in the ovary. Reproductive Medicine and Biology, 7(1), 11-16.

Ming, L., Yuan, L., Yi, L., Ding, G., Hasi, S., Chen, G., Jambl, T., Hedayat-Evright, N., Batmunkh, M., Badmaevna, G.K. & Gan-Erdene, T. (2020). Whole-genome sequencing of 128 camels across Asia reveals origin and migration of domestic Bactrian camels. Communications Biology, 3(1), 1-9.

Müller, M., Carter, S., Hofer, M.J. & Campbell, I. L. (2010). the chemokine receptor CXCR3 and its ligands CXCL9, CXCL10 and CXCL11 in neuroimmunity–a tale of conflict and conundrum. Neuropathology and Applied Neurobiology, 36(5), 368-387.

Nakatsuka, K., Nishizawa, Y. & Ralston, S. H. (2003). Phenotypic characterization of early onset Paget's disease of bone caused by a 27‐bp duplication in the TNFRSF11A gene. Journal of Bone and Mineral Research, 18(8), 1381-1385.

Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M.A., Bender, D., Maller, J., Sklar, P., De Bakker, P. I., Daly, M. J. & Sham, P. C. (2007). PLINK: a tool set for whole-genome association and population-based linkage analyses. The American Journal of Human Genetics, 81(3), 559-575.

Purfield, D. C., McParland, S., Wall, E. & Berry, D. P. (2017). The distribution of runs of homozygosity and selection signatures in six commercial meat sheep breeds. PLoS One, 12(5), p.e0176780.

Quinlan, A.R. & Hall, I. M. (2010). BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26(6), 841-842.

Simoni, M., Gromoll, J. & Nieschlag, E. (1997). The follicle-stimulating hormone receptor: biochemistry, molecular biology, physiology, and pathophysiology. Endocrine Reviews, 18(6), 739-773.

Sun, T., Yi, H., Yang, C., Kishnani, P. S. & Sun, B. (2016). Starch binding domain-containing protein 1 plays a dominant role in glycogen transport to lysosomes in liver. Journal of Biological Chemistry, 291(32), 16479-16484.

Widmer, S., Seefried, F. R., von Rohr, P., Häfliger, I. M., Spengeler, M. & Drögemüller, C. (2021). A major QTL at the LHCGR/FSHR locus for multiple birth in Holstein cattle. Genetics Selection Evolution, 53(1), 1-15.

Zhao, H., Tang, M., Liu, M. & Chen, L. (2018). Glycophagy: An emerging target in pathology. Clinica Chimica Acta, 484, 298-303.

Zhou, J., Du, J., Yue, S., Xue, B., Wang, L., Peng, Q. & Xue, B. (2021). N-carbamylglutamate promotes follicular development by modulating cholesterol metabolism in Yak ovaries. Agriculture, 11(9), 825.