- Boitard, S., Boussaha, M., Capitan, A., Rocha, D., & Servin, B. (2016). Uncovering adaptation from sequence data: lessons from genome resequencing of four cattle breeds. Genetics, 203(1), 433-450.
- Bonhomme, M., Chevalet, C., Servin, B., Boitard, S., Abdallah, J., Blott, S., & SanCristobal, M. (2010). Detecting selection in population trees: the Lewontin and Krakauer test extended. Genetics, 186(1), 241-262.
- Brito, L. F., Kijas, J. W., Ventura, R. V., Sargolzaei, M., Porto-Neto, L. R., Cánovas, A., Schenkel, F. S. (2017). Genetic diversity and signatures of selection in various goat breeds revealed by genome-wide SNP markers. BMC genomics, 18(1), 1-20.
- Caetano, A. R. (2009). Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Embrapa Recursos Genéticos e Biotecnologia-Artigo em Periódico Indexado (ALICE).
- Carvalheira, J., Salem, M., Thompson, G., Chen, S., & Beja-Pereira, A. (2014). Genome-wide association study for milk and protein yields in Portuguese Holstein cattle. MARS, 131(131.83), 131-183.
- Cassar-Malek, I., Boby, C., Picard, B., Reverter, A., & Hudson, N. J. (2017). Molecular regulation of high muscle mass in developing Blonde d'Aquitaine cattle foetuses. Biology Open, 6(10), 1483-1492.
- Chen, K.-L., Wang, H.-L., Jiang, L.-Z., Qian, Y., Yang, C.-X., Chang, W.-W., & Xing, G.-D. (2020). Heat stress induces apoptosis through disruption of dynamic mitochondrial networks in dairy cow mammary epithelial cells. In Vitro Cellular & Developmental Biology-Animal, 56(4), 322-331.
- Decker, J. E., McKay, S. D., Rolf, M. M., Kim, J., Alcalá, A. M., Sonstegard, T. S., & Praharani, L. (2014). Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle. PLoS Genet, 10(3), e1004254.
- Fariello, M. I., Boitard, S., Naya, H., SanCristobal, M., & Servin, B. (2013). Detecting signatures of selection through haplotype differentiation among hierarchically structured populations. Genetics, 193(3), 929-941.
- Gondro, C. (2015). Primer to analysis of genomic data using R: Springer.
- Höglund, J. K., Guldbrandtsen, B., Lund, M. S., & Sahana, G. (2012). Analyzes of genome-wide association follow-up study for calving traits in dairy cattle. BMC Genetics, 13(1), 1-9.
- Kijas, J. W. (2014). Haplotype-based analysis of selective sweeps in sheep. Genome, 57(8), 433-437.
- Kuehn, L., Keele, J., Bennett, G., McDaneld, T., Smith, T., Snelling, W., & Thallman, R. (2011). Predicting breed composition using breed frequencies of 50,000 markers from the US Meat Animal Research Center 2,000 Bull Project. Journal of Animal Science, 89(6), 1742-1750.
- Maniatis, T. (1989). Molecular Cloning: Decontamination of Dilute Solutions of Ethidium Bromide. Cold Spring Harbor Laboratory Press.
- Meade, K. G., Gormley, E., O'Farrelly, C., Park, S. D., Costello, E., Keane, J., MacHugh, D. E. (2008). Antigen stimulation of peripheral blood mononuclear cells from Mycobacterium bovis infected cattle yields evidence for a novel gene expression program. BMC Genomics, 9(1), 1-17.
- Miles, A. M., Posbergh, C. J., & Huson, H. J. (2021). Direct Phenotyping and Principal Component Analysis of Type Traits Implicate Novel QTL in Bovine Mastitis through Genome-Wide Association. Animals, 11(4), 1147.
- Mokhber, M., Moradi-Shahrbabak, M., Sadeghi, M., Moradi-Shahrbabak, H., Stella, A., Nicolzzi, E., ... & Williams, J. L. (2018). A genome-wide scan for signatures of selection in Azeri and Khuzestani buffalo breeds. BMC Genomics, 19(1), 449.
- Mosavi kashani, M., Rahimi Mianji, Gh., & Moradi Shahrbabak, H. (2018). Genome-Wide Scan for Selection Signatures in Iranian Sarabi and Taleshi Indigenous Breed. Research on Animal Production, 9, 88-99
- Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A., Bender, D., Daly, M. J. (2007). PLINK: a tool set for whole-genome association and population-based linkage analyses. The American Journal of Human Genetics, 81(3), 559-575.
- Sabeti, P. C., Schaffner, S. F., Fry, B., Lohmueller, J., Varilly, P., Shamovsky, O., Lander, E. (2006). Positive natural selection in the human lineage. Science, 312(5780), 1614-1620.
- Sempéré, G., Moazami-Goudarzi, K., Eggen, A., Laloë, D., Gautier, M., & Flori, L. (2015). WIDDE: a Web-Interfaced next generation database for genetic diversity exploration, with a first application in cattle. BMC Genomics, 16(1), 1-8.
- Stella, A., Ajmone-Marsan, P., Lazzari, B., & Boettcher, P. (2010). Identification of selection signatures in cattle breeds selected for dairy production. Genetics, 185(4), 1451-1461.
- Vatsiou, A. I., Bazin, E., & Gaggiotti, O. E. (2016). Detection of selective sweeps in structured populations: a comparison of recent methods. Molecular Ecology, 25(1), 89-103.
- Winter, A., Van Eckeveld, M., Bininda-Emonds, O., Habermann, F. A., & Fries, R. (2003). Genomic organization of the DGAT2/MOGAT gene family in cattle (Bos taurus) and other mammals. Cytogenetic and Genome Research, 102(1-4), 42-47.
- Yan, Z., Wang, Z., Zhang, Q., Yue, S., Yin, B., Jiang, Y., & Shi, K. (2020). Identification of whole‐genome significant single nucleotide polymorphisms in candidate genes associated with body conformation traits in Chinese Holstein cattle. Animal Genetics, 51(1), 141.
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