- Akey, J. M. (2009). Constructing genomic maps of positive selection in humans: where do we go from here. Genome Research, 19(5), 711-722.
- Akey, J. M., Zhang, G., Zhang, K., Jin, L. & Shriver, M. D. (2002). Interrogating a high density SNP map for signatures of natural selection. Genome Research, 12(12), 1805-1814.
- Bagheri, M., Mirai-Ashtiani, R., Moradi-Shahrbabak, M., Nejati-Javaremi, A., Pakdel, A., Von Borstel, U. U., Pimentel, E. C. G. & KÖnig, S. (2013). Selective genotyping and logistic regression analyses to identify favorable SNP-genotypes for clinical mastitis and production traits in Holstein dairy cattle. Livestock Science, 151, 140-151.
- Barendse, W., Harrison, B. E., Bunch, R. J., Thomas, M. B. & Turner, L. B. (2009). Genome wide signatures of positive selection: the comparison of independent samples and the identification of regions associated to traits. BMC Genomics, 10, 178-192.
- Biswas, S. & Akey, J. M. (2006). Genomic insights into positive selection. Trends in Genetics, 22(8), 437-436.
- Crowder, R. J., Phommaly, Ch., Tao, Y., Hoog, J., Luo, J., Perou, Ch. M., Parker, J. S., Miller, M. A., Huntsman, D. G., Lin, L., Snider, J., Davies, Sh. R., Olson, J. A., Watson, M. A., Saporita, A., Weber, J. D. & Ellis, M. J. (2009). PIK3CA and PIK3CB inhibition produce synthetic lethality when combined with estrogen deprivation in estrogen receptor–positive breast cancer. Cancer Research, 69(9), 3955-3962.
- De Simoni Gouveia, J. J., Da Silva, M. V. G. B., Paiva, S. R. & De Oliveira, S. M. P. (2014). Identification of selection signatures in livestock species. Genetics and Molecular Biology, 37(2), 330-342.
- Gholami, M. (2014). Selection signature detection in a diverse set of chicken breeds. Ph.D. thesis. Faculty of Agricultural Sciences Georg-August-University, Germany.
- Gu, J., Orr, N., Park, S. D., Katz, L. M., Sulimova, G., MacHugh, D. E. & Hill, E. W. (2009). A genome scan for positive selection in Thoroughbred horses. PLoS ONE, 4(6), e5767-e5783.
- Hays, B. J., Chamberlain, A. J., Maceachern, S., Savin, K., Mcpartlan, H., Macleod, I., Sethuran, L. & Goddard, M. E. (2009). A genome map of divergent artificial selection between Bos Taurus dairy cattle and Bos Taurus beef cattle. Animal Genetic, 40(2), 176-184.
- Kaupe, B., Brandt, H., Prinzenberg, E. M. & Erhardt, G. (2007). German Holstein cattle production, somatic cell score, conformation, reproduction, and productive lifespan in Joint analysis of the influence of CYP11B1 and DGAT1 genetic variation on milk. Journal of Animal Science, 85, 11-21.
- Kimura, M. (1989). The neutral theory of molecular evolution and the world view of neutralists. Genome, 31(1), 24-31.
- MacEachern, S., Hayes, B., McEwan, J. & Goddard, M. (2009). An examination of positive selection and changing effective population size in Angus and Holstein cattle populations (Bos taurus) using a high density SNP genotyping platform and the contribution of ancient polymorphism to genomic diversity in domestic cattle. BMC Genomics, 10, 181-199.
- Mancini, G., Gargani, M., Chillemi, G., Nicolazzi, E. L., Marsan, P. A., Valentini, A. & Pariset, L. (2014). Signatures of selection in five Italian cattle breeds detected by a 54K SNP panel. Molecular Biology Reports, 41, 957-965.
- Manzari, Z., Mehrabani-Yeganeh, H., Nejati-Javaremi, A. & Moradi, M. H. (2016). Genomic evaluation for selection signatures in some Iranian sheep breeds. Ms. Thesis. Faculty of Genetic and animal breeding Tehran University, Iran. (in Farsi)
- Manzari, Z., Mehrabani-Yeganeh, H., Nejati-Javaremi, A., Moradi, M. H. & Gholizadeh, M. (2016). Study of selective signatures in some Iranian sheep breeds. In: Proceedings of 2nd International & 14th Iranian genetics congress, 21-23 May, Sh. Beheshti University, Tehran, Iran, pp. 1-5. (in Farsi)
- Marques, E. F. (2009). Application of genomics-based tools leading to the identification of markers on bovine chromosome 14 influencing milk production and carcass quality traits. Ph.D. thesis. Faculty of Agricultural, Food and Nutritional Science Alberta University, Alberta.
- Moradi, M. H., Nejati-Javaremi, A., Moradi-Shahrbabak, M., Dodds, K. G. & McEwan, J. C. (2010). Whole-genome scan of population differentiation in Zel and Lori-Bakhtiari sheep breeds. Journal of Agricultural biotechnology, 2(2), 57-70. (in Farsi)
- Moradi, M. H., Nejati-Javaremi, A., Moradi-Shahrbabak, M., Dodds, K. G. & McEwan, J. C. (2012). Genomic scan of selective sweeps in thin and fat tail sheep breeds for identifying of candidate regions associated with fat deposition. BMC Genetics, 13, 10-24.
- Moradi, M. H., Phua, S. H., Hedayat, N., Khodaei-Motlagh, M. & Razmkabir, M. (2017). Haplotype and genetic diversity of mtDNA in indigenous Iranian sheep and an insight into the history of sheep domestication. Journal of Agricultural Science and Technology, 19(3), 591-601.
- Ogorevc, J., Kunej, T., Razpet, A. & Dovc, P. (2009). Database of cattle candidate genes and genetic markers for milk production and mastitis. Animal Genetics, 40(6), 832-851.
- Pasandideh, M., Kharrati Koopaei, H., Mohammad Abadi, M. R. & Esmailizadeh Koshkoiyeh, A. (2016). Association of the OPN and PPARGC1A alleles with milk somatic cell count in Iranian Holstein cattle. Modern Genetics Journal, 11(3), 357-365. (in Farsi)
- Planells-Ferrer, L., Urresti, J., Coccia, E., Galenkamp, K. M., Calleja-Yagüe, I., López-Soriano, J. Carriba, P., Barneda-Zahonero, B., Segura, M. F. & Comella, J. X. (2016). Fas apoptosis inhibitory molecules: more than death-receptor antagonists in the nervous system. Journal of Neurochemistry, 139(1), 11-21.
- Qanbari, S., Pimentel, E. C. G., Tetens, J., Thaller, G., Lichtner, P., Sharifi, A. R. & Simianer, H. (2010). A genome-wide scan for signatures of recent selection in Holstein cattle. Animal Genetics, 41(4), 377-389.
- Qanbari, S., Gianola, D., Hayes, B., Schenkel, F., Miller, S., Moore, S., Thaller, G. & Simianer, H. (2011). Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle. BMC Genomics, 12, 318-329.
- Randhawa, I. A. S., Khatkar, M. S., Thomson, P. C. & Raadsma, H. W. (2015). Composite selection signals for complex traits exemplified through bovine stature using multibreed Cohorts of European and African Bos Taurus. G3.Genes|Genomes|Genetics, 5(7), 1391-1401.
- Sotgia, F., Whitaker-Menezes, D., Martinez-Outschoorn, U. E., Salem, A. F., Tsirigos, A., Lamb, R., Sneddon, S., Hulit, J., Howell, A. & Lisanti, M. P. (2012). Mitochondria "fuel" breast cancer metabolism: fifteen markers of mitochondrial biogenesis label epithelial cancer cells, but are excluded from adjacent stromal cells. Cell Cycle, 11(23), 4390-401.
- Stella, A., Ajmone-Marsan, P., Lazzari, B. & Boettcher, P. (2010). Identification of selection signatures in cattle breeds selected for dairy production. Genetics, 185(4), 1451-1461.
- Swiderek, W. P., Charon, A. W. & Gruszczynska, J. (2006). Relationship between blood lymphocyte phenotype, DBR1 (MHC class II) Gene polymorphism and somatic cell count in ewe milk. Bull Vet Inst Pulawy, 50, 73-77.
- Teo, Y. Y., Fry, A. E., Clark, T. G., Tai, E. S. & Seielstad, M. (2007). On the usage of HWE for identifying genotyping errors. Annals of Human Genetics, 71, 701-703.
- Tilli, T. M., da Silva Castro, C., Tuszynski, J. A. & Carels, N. (2016). A strategy to identify housekeeping genes suitable for analysis in breast cancer diseases. BMC Genomics, 17(1), 639-649.
- Urbinati, I., Stafuzza, N. B., Oliveira, M. T., Chud, T. C. S., Higa, R. H., de Almida Regitano, L. C., de Alencar, M. M., Buzanskas, M. E. & Munari, D. P. (2016). Selection signatures in Canchim beef cattle. Journal of animal science and biotechnology, 7, 29-37.
- Weir, B. S. & Clark Cockerham, C. (1984). Estimating F-statistics for the analysis of population structure. Evolution, 38(6), 1358-1370.
- Wright, S. (1951). The genetical structure of populations. Annals of Eugenics, 15, 323-354.
- Wright, S. (1965). The interpretation of population structure by F-statistics with special regard to systems of mating. Evolution, 19(3), 395-420.
- Zhao, F., McParland, S., Kearney, F., Du, L. & Berry, D. (2015). Detection of selection signatures in dairy and beef cattle using high-density genomic information. Genetic Selection Evolution, 47, 49-60.
|
