برآورد ضریب همخونی ژنومی و اندازه مؤثر جمعیت در نژادهای مختلف بز

Al-Mamun, H. A., a Clark, S., Kwan, P., & Gondro, C. (2015). Genome-wide linkage disequilibrium and genetic diversity in five populations of Australian domestic sheep. Genetics Selection Evolution, 47(1), 1-14.

 Barbato, M., Orozco-terWengel, P., Tapio, M., & Bruford, M. W. (2015). SNeP: a tool to estimate trends in recent effective population size trajectories using genome-wide SNP data. Frontiers in genetics, 6, 109.

Bertolini, F., Servin, B., Talenti, A., Rochat, E., Kim, E. S., Oget, C., ... & Crepaldi, P. (2018). Signatures of selection and environmental adaptation across the goat genome post-domestication. Genetics Selection Evolution, 50(1), 1-24.

Corbin, L. J., Liu, A. Y. H., Bishop, S. C., & Woolliams, J. A. (2012). Estimation of historical effective population size using linkage disequilibria with marker data. Journal of Animal Breeding and Genetics, 129(4), 257-270.

Curik, I., Ferenčaković, M., & Sölkner, J. (2014). Inbreeding and runs of homozygosity: A possible solution to an old problem. Livestock Science, 166, 26-34.

Forutan, M., Ansari Mahyari, S., Baes, C., Melzer, N., Schenkel, F. S., & Sargolzaei, M. (2018). Inbreeding and runs of homozygosity before and after genomic selection in North American Holstein cattle. BMC genomics, 19, 1-12.

Frankham, R., Bradshaw, C. J., & Brook, B. W. (2014). Genetics in conservation management: revised recommendations for the 50/500 rules, Red List criteria and population viability analyses. Biological Conservation, 170, 56-63.

Gomez-Raya, L., Rodríguez, C., Barragán, C., & Silió, L. (2015). Genomic inbreeding coefficients based on the distribution of the length of runs of homozygosity in a closed line of Iberian pigs. Genetics Selection Evolution, 47, 1-15.

Islam, R., Li, Y., Liu, X., Berihulay, H., Abied, A., Gebreselassie, G., ... & Ma, Y. (2019). Genome-wide runs of homozygosity, effective population size, and detection of positive selection signatures in six Chinese goat breeds. Genes, 10(11), 938.

Luigi-Sierra, M. G., Fernández, A., Martínez, A., Guan, D., Delgado, J. V., Álvarez, J. F., ... & Amills, M. (2022). Genomic patterns of homozygosity and inbreeding depression in Murciano-Granadina goats. Journal of animal science and biotechnology, 13(1), 35.

Marquez, G. C., Speidel, S. E., Enns, R. M., & Garrick, D. J. (2010). Genetic diversity and population structure of American Red Angus cattle. Journal of animal science, 88(1), 59-68.

Marras, G., Gaspa, G., Sorbolini, S., Dimauro, C., Ajmone‐Marsan, P., Valentini, A., ... & Macciotta, N. P. (2015). Analysis of runs of homozygosity and their relationship with inbreeding in five cattle breeds farmed in Italy. Animal genetics, 46(2), 110-121.

Mastrangelo, S., Tolone, M., Di Gerlando, R., Fontanesi, L., Sardina, M. T., & Portolano, B. (2016). Genomic inbreeding estimation in small populations: evaluation of runs of homozygosity in three local dairy cattle breeds. Animal, 10(5), 746-754.

Mastrangelo, S., Di Gerlando, R., Sardina, M. T., Sutera, A. M., Moscarelli, A., Tolone, M., ... & Portolano, B. (2021). Genome-wide patterns of homozygosity reveal the conservation status in five italian goat populations. Animals, 11(6), 1510.

Mohammadi, H., Rafat, A., Moradi Shahrebabak, H., Shodja, J., & Moradi, M. H. (2018). Estimation of genomic inbreeding coefficient and effective population size in Zandi sheep breed using density SNP markers (50K SNPChip). Animal Sciences Journal, 31(119), 129-142. (In Persian)

Mohammadi, H., Rafat, S. A., Moradi Shahrbabak, H., Shodja, J., & Moradi, M. H. (2020). Genome-wide association study and gene ontology for growth and wool characteristics in Zandi sheep. Journal of Livestock Science and Technologies, 8(2), 45-55.

Moosanezhad Khabisi, M., Esmailizadeh, A., & Asadi Fozi, M. (2022). Evaluation of Genomic Inbreeding Rate in Iranian Native Sheep using Dense SNP Markers (600K). Research On Animal Production (Scientific and Research), 13(35), 158-167.

Pasandideh, M., Gholizadeh, M., & Rahimi Mianji, G. (2020). Estimation of Effective Population Size and Genomic Inbreeding Coefficients in Baluchi Sheep Using Genome-Wide Single Nucleotide Polymorphisms (SNPs). Iranian Journal of Applied Animal Science, 10(2), 287-295.

Peripolli, E., Munari, D. P., Silva, M. V. G. B., Lima, A. L. F., Irgang, R., & Baldi, F. (2017). Runs of homozygosity: current knowledge and applications in livestock. Animal genetics, 48(3), 255-271.

Purcell, S., Neale, B., Todd-Brown, K., Thomas, L., Ferreira, M. A., Bender, D., ... & Sham, P. C. (2007). PLINK: a tool set for whole-genome association and population-based linkage analyses. The American journal of human genetics, 81(3), 559-575.

Purfield, D. C., McParland, S., Wall, E., & Berry, D. P. (2017). The distribution of runs of homozygosity and selection signatures in six commercial meat sheep breeds. PLoS One, 12(5), e0176780.

VanRaden, P. M. (2008). Efficient methods to compute genomic predictions. Journal of dairy science, 91(11), 4414-4423.

Wright, L. I., Tregenza, T., & Hosken, D. J. (2008). Inbreeding, inbreeding depression and extinction. Conservation Genetics, 9, 833-843.

Zhang, Q., Calus, M. P., Guldbrandtsen, B., Lund, M. S., & Sahana, G. (2015). Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds. BMC genetics, 16(1), 1-11.