شناسایی LncRNAهای مرتبط با رشد عضله سینه مرغ بوسیله روش RNA-seq

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5.             Gong, C., Li, Z., Ramanujan, K., Clay, I., Zhang, Y., Lemire-Brachat, S., & Glass, David J. (2015). A Long Non-coding RNA, LncMyoD, Regulates Skeletal Muscle Differentiation by Blocking IMP2-Mediated mRNA Translation. Developmental Cell, 34(2): 181-191. doi:https://doi.org/10.1016/j.devcel.2015.05.009

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11.          Lange, S., Perera, S., Teh, P., & Chen, J. (2012). Obscurin and KCTD6 regulate cullin-dependent small ankyrin-1 (sAnk1. 5) protein turnover. Molecular biology of the cell, 23(13): 2490-2504.

12.          Li, A., Zhang, J., & Zhou, Z. (2014). PLEK: a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme. BMC bioinformatics, 15(1): 311.

13.          Liu, W., & Zhao, J. (2014). Insights into the molecular mechanism of glucose metabolism regulation under stress in chicken skeletal muscle tissues. Saudi journal of biological sciences, 21(3): 197-203.

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15.          Ørom, U. A., Derrien, T., Beringer, M., Gumireddy, K., Gardini, A., Bussotti, G., . . . Huang, Q. (2010). Long noncoding RNAs with enhancer-like function in human cells. Cell, 143(1): 46-58.

16.          Pertea, M., Kim, D., Pertea, G. M., Leek, J. T., & Salzberg, S. L. (2016). Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown. Nature protocols, 11(9): 1650.

17.          Ren, T., Li, Z., Zhou, Y., Liu, X., Han, R., Wang, Y., . . . Kang, X. (2018). Sequencing and characterization of lncRNAs in the breast muscle of Gushi and Arbor Acres chickens. Genome, 61(5): 337-347.

18.          Schjoldager, K. T., Vester-Christensen, M. B., Bennett, E. P., Levery, S. B., Schwientek, T., Yin, W., . . . Clausen, H. (2010). O-glycosylation modulates proprotein convertase activation of angiopoietin-like protein 3: possible role of polypeptide GalNAc-transferase-2 in regulation of concentrations of plasma lipids. J Biol Chem, 285(47): 36293-36303. doi:10.1074/jbc.M110.156950

19.          Sun, L., Luo, H., Bu, D., Zhao, G., Yu, K., Zhang, C., . . . Zhao, Y. (2013). Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts. Nucleic acids research, 41(17): e166-e166.

20.          Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D. R., . . . Pachter, L. (2012). Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks. Nature protocols, 7(3): 562.

21.          Wang, L., Park, H. J., Dasari, S., Wang, S., Kocher, J.-P., & Li, W. (2013). CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model. Nucleic acids research, 41(6): e74-e74.

22.          Wu, S. C., Kallin, E. M., & Zhang, Y. (2010). Role of H3K27 methylation in the regulation of lncRNA expression. Cell Res, 20(10): 1109-1116. doi:10.1038/cr.2010.114

23.          Wucher, V., Legeai, F., Hedan, B., Rizk, G., Lagoutte, L., Leeb, T., . . . Lohi, H. (2017). FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome. Nucleic acids research, 45(8): e57-e57.

24.          Yin, Z., Deng, T., Peterson, L. E., Yu, R., Lin, J., Hamilton, D. J., . . . Zhan, M. (2014). Transcriptome analysis of human adipocytes implicates the NOD-like receptor pathway in obesity-induced adipose inflammation. Molecular and cellular endocrinology, 394(1-2): 80-87.

25.          Zhou, L., Sun, K., Zhao, Y., Zhang, S., Wang, X., Li, Y., . . . Bao, X. (2015). Linc-YY1 promotes myogenic differentiation and muscle regeneration through an interaction with the transcription factor YY1. Nature communications, 6: 10026.